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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15600693_15601326_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15600693 - 15601326
Intron Length:
634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TATCTGATCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTCTTAAAC
Flanking Amino Acid:
IEARGWYYGQFQDQLLNICL
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
72.4
0.5
0.9
65.5
39.5
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
76.6
0.81
1.3
80.78
32.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018539
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048409
15593294 - 15609616
16323