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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15601446_15605746_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15601446 - 15605746
Intron Length:
4301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTACT
5'SS Class:
strong_major
3'SS Sequence:
AATTTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCAAAT
U12 Branch Point Sequence:
CCAGCTTTAAGT
Flanking Amino Acid:
FVLLFNPWCPGDAVYMANEN
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.4
33.5
Major BPS
64.7
0.37
1.1
69.5
34.1
Major PPT
81.2
0.7
0.9
77.7
40.7
Minor 5ss
37
-1.5
3.1
51.8
44.8
Minor BPS
51.7
0.13
1.8
63.57
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018539
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048409
15593294 - 15609616
16323