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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_156044_156638_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
156044 - 156638
Intron Length:
595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTTGG
5'SS Class:
major
3'SS Sequence:
TTTTTGTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGTAGCTTAATT
Flanking Amino Acid:
VAAPLDLFQDYQVASQHKNG
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
67.8
39.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
36.6
-1.5
2.9
44.8
43.4
Minor BPS
65.5
0.56
1.8
81.54
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014035
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014666
145170 - 162852
17683