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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15614601_15614816_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15614601 - 15614816
Intron Length:
216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTGTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAG
U12 Branch Point Sequence:
TTTCCTTGTACA
Flanking Amino Acid:
TLDNPAIDIQVLGEAKVNKE
Intron Amino Acid Position:
578

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
70.8
35
Major BPS
75.6
0.64
1.5
84
34.5
Major PPT
83.9
0.76
0.8
79.7
32.4
Minor 5ss
28.4
-2.5
2.9
34.7
41.7
Minor BPS
57
0.21
1.8
73.78
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010198
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010658
15614325 - 15626154
11830