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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15616826_15616945_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
15616826 - 15616945
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTAAGAAGC
5'SS Class:
major
3'SS Sequence:
GAAGTTGGCAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TGGTCCTTTAGA
Flanking Amino Acid:
RKERDIFKKAHLNLILVLAN
Intron Amino Acid Position:
463

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.8
0.35
1.3
61.1
43.9
Major BPS
70
0.5
1
67
39.8
Major PPT
46.7
-0.1
1.2
40.1
42.6
Minor 5ss
35.7
-1.6
3
48.6
40.5
Minor BPS
56.8
0.21
2
68.01
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010198
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010658
15614325 - 15626154
11830