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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15616982_15618466_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15616982 - 15618466
Intron Length:
1485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTTCTAACA
Flanking Amino Acid:
DVTSDYKYEEGSRKERDIFK
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
89.5
23.2
Major BPS
100
1.24
0.5
100
0
Major PPT
84
0.76
0.8
81
29.6
Minor 5ss
38.7
-1.3
2.9
50.9
45.5
Minor BPS
63.8
0.43
1.6
75.11
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010198
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010658
15614325 - 15626154
11830