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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15618713_15619813_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15618713 - 15619813
Intron Length:
1101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACACAGA
5'SS Class:
major
3'SS Sequence:
CTTGATCCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTTTCTTGATC
Flanking Amino Acid:
LDATPQEESGGIYQCGPASR
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
62.4
43.9
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
68.2
0.41
0.8
61.7
34.7
Minor 5ss
37
-1.5
3.2
49.1
46.7
Minor BPS
80
0.93
1
84.94
26.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010198
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010658
15614325 - 15626154
11830