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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15621320_15622061_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15621320 - 15622061
Intron Length:
742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
AATATTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TGTCTTATAAAT
Flanking Amino Acid:
KYLGRVLSAMVNGNDDQGVV
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
79.7
35.3
Major BPS
78.6
0.71
1
78.6
31
Major PPT
80
0.67
0.9
73.1
41.2
Minor 5ss
41.2
-1
2.9
54.5
43.9
Minor BPS
51.3
0.12
1.7
72.29
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010198
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010658
15614325 - 15626154
11830