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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15622813_15623040_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15622813 - 15623040
Intron Length:
228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGTACAT
U12 Branch Point Sequence:
GTGGTGGTACAT
Flanking Amino Acid:
FVLLFNPWSSGDDVFMSNKA
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
49.9
-0
1.4
60.7
45.9
Major PPT
90.6
0.91
0.7
88.7
28.3
Minor 5ss
43.1
-0.8
2.9
57.4
46.9
Minor BPS
32.6
-1.2
2.5
48.4
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010198
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010658
15614325 - 15626154
11830