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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15623753_15626115_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
15623753 - 15626115
Intron Length:
2363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTTCTTTAA
5'SS Class:
weak_major
3'SS Sequence:
AGCTGCAACACAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATAGCT
Flanking Amino Acid:
NSNYVINEKLPSTNWHLKEN
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.9
0.16
1.2
58
37
Major BPS
100
1.24
0.5
100
0
Major PPT
55.7
0.13
1
47.3
39
Minor 5ss
35
-1.7
2.8
38.6
41.5
Minor BPS
65.5
0.56
1.8
88.76
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010198
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010658
15614325 - 15626154
11830