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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_160513_160665_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
160513 - 160665
Intron Length:
153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGGCA
5'SS Class:
major
3'SS Sequence:
CTCTCCAACTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAA
U12 Branch Point Sequence:
TTCTCTCCAACT
Flanking Amino Acid:
TSRDNPTPAQDVSEQPKLPT
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
66.7
39.1
Major BPS
55.5
0.14
1.3
66.7
39.7
Major PPT
68.9
0.42
0.9
66.4
33.2
Minor 5ss
29.1
-2.4
3.4
30.5
42.8
Minor BPS
58.7
0.35
1.9
80.84
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014035
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014666
145170 - 162852
17683