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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_160811_161626_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
160811 - 161626
Intron Length:
816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTCAATGTCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTTGGTTCAATG
Flanking Amino Acid:
VATLPGSNLRFQINEYGTLK
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
81.5
32.7
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
66.7
0.38
0.9
60.7
39.9
Minor 5ss
35.8
-1.6
3.3
40.8
45.4
Minor BPS
47.5
-0.3
2.1
58.73
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014035
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014666
145170 - 162852
17683