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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1639667_1640688_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1639667 - 1640688
Intron Length:
1022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTGATCTATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTTTCTCATCT
Flanking Amino Acid:
VSAFSIGFGPMTWLVLSEIY
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
84.6
33.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
71.9
0.49
1
66
39.8
Minor 5ss
41.1
-1
2.8
51.8
38.9
Minor BPS
60.1
0.4
1.8
79.56
42.7

Associated Gene:

Gene:
SLC2A10
Ensembl Gene ID:
ENSAPLG00000009224
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028015
1638138 - 1645960
7823
ENSAPLT00000022873
1638138 - 1645175
7038
ENSAPLT00000009596
1638138 - 1645407
7270