About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1677775_1679605_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1677775 - 1679605
Intron Length:
1831

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AACATTTTAACT
Flanking Amino Acid:
KEDYQKLGPTKFAEQAIFFF
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
76.8
33.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
78.7
0.65
0.8
76.7
32
Minor 5ss
32.2
-2
3
41.4
39.1
Minor BPS
63.8
0.51
1.3
71.65
39.4

Associated Gene:

Gene:
SLC13A3
Ensembl Gene ID:
ENSAPLG00000009083
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009500
1657435 - 1685031
27597