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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1681868_1682192_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1681868 - 1682192
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAGGAG
U12 Branch Point Sequence:
CGCGCTGCAGCT
Flanking Amino Acid:
GGFAMAKGCEESGLSVWIGG
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.6
41.7
Major BPS
37.8
-0.7
1.5
29.2
33.9
Major PPT
81.5
0.71
0.7
76.1
25.9
Minor 5ss
24.7
-2.9
3
28.6
43.8
Minor BPS
36.4
-0.9
2.2
47.89
45.2

Associated Gene:

Gene:
SLC13A3
Ensembl Gene ID:
ENSAPLG00000009083
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009500
1657435 - 1685031
27597