About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1689003_1689888_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1689003 - 1689888
Intron Length:
886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACGTAGT
5'SS Class:
major
3'SS Sequence:
GTTCTTTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
CCTCTGCTAACA
Flanking Amino Acid:
RAGLGHISAAWLSVCAYCED
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
74.7
41.5
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
76.2
0.59
0.9
71.7
38.2
Minor 5ss
36.5
-1.5
3
48.4
42.4
Minor BPS
44.2
-0.4
2.3
56.54
42.9

Associated Gene:

Gene:
OCSTAMP
Ensembl Gene ID:
ENSAPLG00000027903
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038592
1688388 - 1693094
4707