About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1745500_1746220_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1745500 - 1746220
Intron Length:
721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCATGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATCT
Flanking Amino Acid:
NVCTSKETWHGPVKKPSRGV
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.3
34.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
69.7
0.44
1
66.7
34.1
Minor 5ss
29.3
-2.4
3.3
29.9
43.1
Minor BPS
74.5
0.85
1.5
91.05
32.7

Associated Gene:

Gene:
OSER1
Ensembl Gene ID:
ENSAPLG00000009034
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009398
1744806 - 1748255
3450