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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1746335_1748178_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1746335 - 1748178
Intron Length:
1844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATGTTTTCATT
Flanking Amino Acid:
AFKKLRVDAAGSTASLPVGE
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
81.4
32.7
Major BPS
100
1.24
0.5
100
0
Major PPT
86.6
0.82
0.7
82.5
26.2
Minor 5ss
35.6
-1.6
2.7
37.5
40.1
Minor BPS
51.3
0.12
1.8
71.67
40.4

Associated Gene:

Gene:
OSER1
Ensembl Gene ID:
ENSAPLG00000009034
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009398
1744806 - 1748255
3450