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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1761334_1761740_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1761334 - 1761740
Intron Length:
407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CCCAACTCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAT
U12 Branch Point Sequence:
ATTGTCCCAACT
Flanking Amino Acid:
IDYMEKNFTGAAQLGHSAGG
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
70
0.5
1.1
71.2
35.2
Major PPT
69
0.43
0.9
61.1
34.6
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
50.1
0.08
2
75.09
41.5

Associated Gene:

Gene:
GDAP1L1
Ensembl Gene ID:
ENSAPLG00000008993
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033027
1758681 - 1763675
4995