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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1761334_1764015_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1761334 - 1764015
Intron Length:
2682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TTGCCCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
GAGCCCCGCACT
Flanking Amino Acid:
IDYMEKNFTGDNVPQLIPEP
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
80.8
0.69
0.8
77.5
31.2
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
42
-0.5
2.1
57.65
44.1

Associated Gene:

Gene:
GDAP1L1
Ensembl Gene ID:
ENSAPLG00000008993
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009350
1758681 - 1770476
11796