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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_17830_18029_R

Intron Information:

Intron Rank:
136382
Intron Class:
major
Intron Phase:
Intron Coordinates:
17830 - 18029
Intron Length:
200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TGTTTATCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
84.2
0.77
0.8
83.8
31.2
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
48.8
-0
2
74.12
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020791
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042885
15608 - 18090
2483