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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1796381_1797314_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1796381 - 1797314
Intron Length:
934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TCCCCCTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCAAAT
U12 Branch Point Sequence:
AAATCCCCACTG
Flanking Amino Acid:
SPPAANMEYMVWDERLARAA
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.6
37.6
Major BPS
52.4
0.06
1.1
58.8
34.5
Major PPT
77.8
0.62
0.7
68.8
31.6
Minor 5ss
27.7
-2.6
3
29.4
36.9
Minor BPS
41.6
-0.7
2
45.22
40.8

Associated Gene:

Gene:
R3HDML
Ensembl Gene ID:
ENSAPLG00000017051
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026549
1796120 - 1798954
2835