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Intron Name: Anas_platyrhynchos_platyrhynchos_21_1818598_1820425_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1818598 - 1820425

Intron Length:

1828

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGACA

5'SS Class:

strong_major

3'SS Sequence:

TGTTTCTTCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTCAC

U12 Branch Point Sequence:

TGCTCCTCACAC

Flanking Amino Acid:

SVRKNHMYSCRFNRQCVVDK

Intron Amino Acid Position:

100

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.8

0.96

0.8

81.4

32.1

Major BPS

72.4

0.56

73.5

32.5

Major PPT

84.3

0.77

0.8

37.2

Minor 5ss

32.5

-2

3.1

40.7

45.3

Minor BPS

48.5

-0.1

1.9

60.74

44.1

Associated Gene:

Gene:

HNF4A

Ensembl Gene ID:

ENSAPLG00000008950

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043587

1814459 - 1830752

16294

ENSAPLT00000009343

1814459 - 1831371

16913