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Intron Name: Anas_platyrhynchos_platyrhynchos_21_1820521_1822808_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1820521 - 1822808

Intron Length:

2288

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGTCAC

5'SS Class:

strong_major

3'SS Sequence:

TGCTCTCTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

CTATGCCAAATT

Flanking Amino Acid:

KCFRAGMKKEAVQNERDRIS

Intron Amino Acid Position:

132

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

68.4

38.7

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

82.5

0.73

0.8

76.7

31.9

Minor 5ss

27.7

-2.6

34.2

Minor BPS

44.3

-0.3

2.3

64.94

45.8

Associated Gene:

Gene:

HNF4A

Ensembl Gene ID:

ENSAPLG00000008950

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043587

1814459 - 1830752

16294

ENSAPLT00000009343

1814459 - 1831371

16913