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Intron Name: Anas_platyrhynchos_platyrhynchos_21_1825259_1828512_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1825259 - 1828512

Intron Length:

3254

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

CCTACCCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAGTAAC

U12 Branch Point Sequence:

TTGTCCCTACCC

Flanking Amino Acid:

AFCELPLDDQVALLRAHAGE

Intron Amino Acid Position:

220

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.8

0.96

0.8

78.4

29.1

Major BPS

57.9

0.2

1.1

59.4

34.8

Major PPT

76.4

0.59

0.8

69.1

31.3

Minor 5ss

28.5

-2.5

35.5

41.2

Minor BPS

59.7

0.28

75.12

41.7

Associated Gene:

Gene:

HNF4A

Ensembl Gene ID:

ENSAPLG00000008950

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043587

1814459 - 1830752

16294

ENSAPLT00000009343

1814459 - 1831371

16913