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Intron Name: Anas_platyrhynchos_platyrhynchos_21_1828601_1829084_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1828601 - 1829084

Intron Length:

484

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAAGAGT

5'SS Class:

strong_major

3'SS Sequence:

TGCTTGTCCAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGGTCAA

U12 Branch Point Sequence:

GCTTGTCCAAAG

Flanking Amino Acid:

SMVFKDVLLLGNDHIIPRNC

Intron Amino Acid Position:

249

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

75.8

39.8

Major BPS

60.5

0.26

1.3

63.4

44.3

Major PPT

62.8

0.29

1.1

62.8

37.7

Minor 5ss

33.3

-1.9

3.3

48.8

Minor BPS

38.1

-1

2.1

42.14

42.6

Associated Gene:

Gene:

HNF4A

Ensembl Gene ID:

ENSAPLG00000008950

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043587

1814459 - 1830752

16294

ENSAPLT00000009343

1814459 - 1831371

16913