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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1842604_1844712_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1842604 - 1844712
Intron Length:
2109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTACCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTCTTTACCC
Flanking Amino Acid:
VAKKVIGILQDGFPIRIKAV
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
78.1
36.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.7
0.71
0.8
78.1
30.4
Minor 5ss
34.6
-1.8
3.2
49.1
46.6
Minor BPS
70.5
0.62
1.6
77.59
39

Associated Gene:

Gene:
TTPAL
Ensembl Gene ID:
ENSAPLG00000008938
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017566
1841250 - 1846628
5379
ENSAPLT00000009301
1841250 - 1846628
5379
ENSAPLT00000030546
1841250 - 1847892
6643