Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1844824_1845507_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1844824 - 1845507

Intron Length:

684

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAAGGATC

5'SS Class:

strong_major

3'SS Sequence:

CTTCCCTCCCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAA

U12 Branch Point Sequence:

ACGCTATTAAAG

Flanking Amino Acid:

PFLKEKIANRFFLHGCDLNS

Intron Amino Acid Position:

249

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

76.9

38.6

Major BPS

82.6

0.81

0.8

82.2

24.5

Major PPT

73.3

0.53

0.7

65.8

30.2

Minor 5ss

36.4

-1.5

3.3

43.8

Minor BPS

45.7

-0.4

1.7

45.33

40.6

Associated Gene:

Gene:

TTPAL

Ensembl Gene ID:

ENSAPLG00000008938

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030546

1841250 - 1847892

6643

ENSAPLT00000017566

1841250 - 1846628

5379

ENSAPLT00000009301

1841250 - 1846628

5379