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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1845706_1846476_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1845706 - 1846476
Intron Length:
771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TCTTCATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CTTACTATAAAC
Flanking Amino Acid:
PCDSSPQDMLRTVSSSDQVI
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1
58.6
40.6
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
86.4
0.82
0.7
81
29.7
Minor 5ss
28.5
-2.5
3.1
32.8
37.2
Minor BPS
51.7
0.03
1.8
65.32
40

Associated Gene:

Gene:
TTPAL
Ensembl Gene ID:
ENSAPLG00000008938
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009301
1841250 - 1846628
5379