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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1850538_1851342_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1850538 - 1851342
Intron Length:
805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TATCTAATAATT
Flanking Amino Acid:
YIMMTLTNWYSPDADFKTMT
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
80
0.75
1
78.6
31
Major PPT
83
0.74
0.7
81.1
31
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
49.8
0.06
1.8
72.86
37.5

Associated Gene:

Gene:
SERINC3
Ensembl Gene ID:
ENSAPLG00000008793
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009197
1849605 - 1875375
25771