About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1851571_1852005_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1851571 - 1852005
Intron Length:
435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATCT
5'SS Class:
strong_major
3'SS Sequence:
GGTTACCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
AGTTCCTAACCA
Flanking Amino Acid:
VIFVLCLLYSSIRSSSNSQV
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.1
35.8
Major BPS
72
0.55
1
71.8
31.4
Major PPT
71.4
0.48
0.9
63
39.3
Minor 5ss
39.2
-1.2
3.4
56.9
47.4
Minor BPS
56.9
0.21
2
70.44
41.7

Associated Gene:

Gene:
SERINC3
Ensembl Gene ID:
ENSAPLG00000008793
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009197
1849605 - 1875375
25771