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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1852184_1852563_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1852184 - 1852563
Intron Length:
380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
AAATCCCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TCTGCCTCAAAA
Flanking Amino Acid:
LTWSAMSNEPERNCNPSLLN
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
80.6
31.8
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
72.1
0.5
0.9
67.2
39.2
Minor 5ss
37.1
-1.5
2.7
44.2
37.1
Minor BPS
57.7
0.24
1.8
68.84
43.3

Associated Gene:

Gene:
SERINC3
Ensembl Gene ID:
ENSAPLG00000008793
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009197
1849605 - 1875375
25771