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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1852655_1853353_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1852655 - 1853353
Intron Length:
699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTCTTT
5'SS Class:
major
3'SS Sequence:
CGTCTTTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCGTCTTTGAAC
Flanking Amino Acid:
SIVSILPKVQEYQPHSGLLQ
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
71.8
40.6
Major BPS
100
1.24
0.5
100
0
Major PPT
68.7
0.42
1
64.9
40.1
Minor 5ss
48.8
-0.1
3.1
73.8
42.7
Minor BPS
61.7
0.35
1.4
66.12
40.2

Associated Gene:

Gene:
SERINC3
Ensembl Gene ID:
ENSAPLG00000008793
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009197
1849605 - 1875375
25771