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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1853524_1854390_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1853524 - 1854390
Intron Length:
867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTATTCTAACG
Flanking Amino Acid:
EEGNSKCWYAALLSCTSLFY
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
79
35.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
86.6
0.82
0.7
78.3
30.6
Minor 5ss
36.6
-1.5
3.3
51.4
45.5
Minor BPS
57.7
0.1
1.8
68.3
39.3

Associated Gene:

Gene:
SERINC3
Ensembl Gene ID:
ENSAPLG00000008793
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009197
1849605 - 1875375
25771