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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1857131_1875318_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1857131 - 1875318
Intron Length:
18188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGCCCTGC
5'SS Class:
weak_major
3'SS Sequence:
GCGTGTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
GCGGCCTGACGG
Flanking Amino Acid:
GLGVLQNGSWVPCLCGGASC
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51
0.03
1.2
42.2
42.2
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
65.3
0.34
0.9
57.9
38.5
Minor 5ss
42.8
-0.8
3.1
50.3
46.3
Minor BPS
39.1
-0.9
2
36.1
45.5

Associated Gene:

Gene:
SERINC3
Ensembl Gene ID:
ENSAPLG00000008793
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009197
1849605 - 1875375
25771