Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_188062_188412_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

188062 - 188412

Intron Length:

351

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTTTT

5'SS Class:

strong_major

3'SS Sequence:

TAAATGTTTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

TTAATGTTAAAT

Flanking Amino Acid:

HRRSYSGSRSRSRSRRRSRS

Intron Amino Acid Position:

198

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

1.1

87.9

29.3

Major BPS

84.4

0.85

34.5

Major PPT

0.41

58.7

46.6

Minor 5ss

55.9

0.2

2.5

39.7

Minor BPS

51.1

0.11

2.2

74.62

41.7

Associated Gene:

Gene:

SRSF6

Ensembl Gene ID:

ENSAPLG00000014472

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015095

187490 - 191011

3522