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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_188622_188847_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
188622 - 188847
Intron Length:
226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTACTCTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTTACT
Flanking Amino Acid:
SSRCSWQDLKDFMRQAGEVT
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
86.3
29
Major BPS
100
1.24
0.5
100
0
Major PPT
68.7
0.42
1.1
65.5
40.5
Minor 5ss
49.5
-0
2.5
68.8
35.6
Minor BPS
72.3
0.78
1.9
93.91
33.3

Associated Gene:

Gene:
SRSF6
Ensembl Gene ID:
ENSAPLG00000014472
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015095
187490 - 191011
3522