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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1890310_1891459_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1890310 - 1891459
Intron Length:
1150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCTGG
5'SS Class:
major
3'SS Sequence:
TCTGCCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTAAC
U12 Branch Point Sequence:
GGTTCCCCATCT
Flanking Amino Acid:
GFTDEDFKRVNINAAQSSFL
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
62.4
44.7
Major BPS
64.7
0.37
1.1
67.2
35.2
Major PPT
81.8
0.72
0.8
72.9
37.4
Minor 5ss
43.4
-0.7
2.9
52.7
46.4
Minor BPS
47.8
-0
2.1
71.23
44.8

Associated Gene:

Gene:
ADA
Ensembl Gene ID:
ENSAPLG00000008763
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009120
1890117 - 1909610
19494