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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1891931_1892321_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1891931 - 1892321
Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGACA
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCCAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTGTTTTAACT
Flanking Amino Acid:
ELLRTKMHFEVCPWSSYLTG
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.8
77.5
32.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
62.9
0.29
0.9
55.4
34
Minor 5ss
27.1
-2.6
2.9
31.6
42.4
Minor BPS
78.3
0.97
1.2
90.89
33.1

Associated Gene:

Gene:
ADA
Ensembl Gene ID:
ENSAPLG00000008763
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009120
1890117 - 1909610
19494