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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1893357_1895202_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1893357 - 1895202
Intron Length:
1846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAATGTAT
5'SS Class:
major
3'SS Sequence:
ATGTCTCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAA
U12 Branch Point Sequence:
TTGTCCTGAATC
Flanking Amino Acid:
SILCCMRHMPSWSPEVVELC
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
71.3
34.7
Major BPS
65.8
0.39
1
73.3
31.3
Major PPT
79.3
0.66
0.9
70.2
40.7
Minor 5ss
40.2
-1.1
3.4
55.7
43.1
Minor BPS
74.2
0.74
1.4
79.31
36.1

Associated Gene:

Gene:
ADA
Ensembl Gene ID:
ENSAPLG00000008763
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009120
1890117 - 1909610
19494