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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_190516_190904_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
190516 - 190904
Intron Length:
389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCGCC
5'SS Class:
major
3'SS Sequence:
CCTTCTTCCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
TTGTGGCTGACG
Flanking Amino Acid:
GRLLEVDLKNGYGFVEFEDS
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1
60.2
39.4
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
75.9
0.58
0.7
69.1
31.5
Minor 5ss
31.7
-2.1
3.2
34
41.8
Minor BPS
41.2
-0.8
2.6
54.95
46.5

Associated Gene:

Gene:
SRSF6
Ensembl Gene ID:
ENSAPLG00000014472
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015095
187490 - 191011
3522