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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1956631_1959226_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1956631 - 1959226
Intron Length:
2596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
TGAGGATTAATT
Flanking Amino Acid:
PESPQGKVLQVIVWGNYGRM
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
85.3
0.79
0.8
83.9
31.1
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
47.7
-0
2.1
66.65
44

Associated Gene:

Gene:
RIMS4
Ensembl Gene ID:
ENSAPLG00000008678
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009022
1956412 - 2003307
46896