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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1960502_1971569_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1960502 - 1971569
Intron Length:
11068

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTATTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TGCAAATTAACC
Flanking Amino Acid:
DSMNSYGSEGNLNFSGVHLA
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
75.1
35.1
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
86.4
0.82
0.8
80.8
36.4
Minor 5ss
36.2
-1.6
2.9
44.9
36.9
Minor BPS
50.2
-0
1.9
62.58
42

Associated Gene:

Gene:
RIMS4
Ensembl Gene ID:
ENSAPLG00000008678
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009022
1956412 - 2003307
46896