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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1971712_2003210_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1971712 - 2003210
Intron Length:
31499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGGGGA
5'SS Class:
major
3'SS Sequence:
CTTTTGTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTGAC
U12 Branch Point Sequence:
CAATAGCTGACT
Flanking Amino Acid:
CMNSFDEEDADGDGRRLKGA
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
54.9
44.4
Major BPS
57.5
0.19
1.1
48.8
38.1
Major PPT
79.5
0.66
0.8
72.8
37.5
Minor 5ss
26.8
-2.7
3.6
28.5
43.8
Minor BPS
41.2
-0.6
2.4
58.62
44.1

Associated Gene:

Gene:
RIMS4
Ensembl Gene ID:
ENSAPLG00000008678
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009022
1956412 - 2003307
46896