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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2014987_2015554_F

Intron Information:

Intron Rank:
124599
Intron Class:
major
Intron Phase:
Intron Coordinates:
2014987 - 2015554
Intron Length:
568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
GTAACATTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68.5
38.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
70.4
0.46
1
62.5
43
Minor 5ss
26.2
-2.7
2.9
22.7
37.4
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017169
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036961
2014922 - 2017266
2345