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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2037902_2038845_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2037902 - 2038845
Intron Length:
944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATAATC
5'SS Class:
major
3'SS Sequence:
TTTCCTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTGTATGACTT
Flanking Amino Acid:
ELQDICNDVLELLDKYLIVN
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
73.5
35.2
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
88.7
0.87
0.6
88
21.8
Minor 5ss
38.2
-1.3
3.1
50
40.5
Minor BPS
45.7
-0.2
2
69.15
42.2

Associated Gene:

Gene:
YWHAB
Ensembl Gene ID:
ENSAPLG00000018025
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029802
2030723 - 2042563
11841