About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2038970_2039863_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2038970 - 2039863
Intron Length:
894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATGAT
U12 Branch Point Sequence:
ATGATTGCAATT
Flanking Amino Acid:
SEVASGDNKQTTVANSQQAY
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.2
35.1
Major BPS
66.9
0.42
1.3
59.7
46.7
Major PPT
85.8
0.8
0.8
80.9
31.1
Minor 5ss
33.8
-1.8
3.2
40.4
40
Minor BPS
42.4
-0.5
2
58.23
39.7

Associated Gene:

Gene:
YWHAB
Ensembl Gene ID:
ENSAPLG00000018025
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029802
2030723 - 2042563
11841