Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2040028_2041177_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2040028 - 2041177

Intron Length:

1150

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGGAGA

5'SS Class:

strong_major

3'SS Sequence:

TGCATGTTTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAAAAAT

U12 Branch Point Sequence:

ATTTCTTGCATG

Flanking Amino Acid:

PEKACNLAKTAFDEAIAELD

Intron Amino Acid Position:

253

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

42.1

Major BPS

62.8

0.32

1.1

67.9

34.4

Major PPT

70.5

0.46

61.5

44.4

Minor 5ss

32.1

-2

3.1

40.4

45.5

Minor BPS

49.6

-0.1

1.9

62.23

40.3

Associated Gene:

Gene:

YWHAB

Ensembl Gene ID:

ENSAPLG00000018025

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029802

2030723 - 2042563

11841