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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2063305_2063922_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2063305 - 2063922
Intron Length:
618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTCCTC
5'SS Class:
major
3'SS Sequence:
ATTTGTATGGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
AGCTCTCTAACC
Flanking Amino Acid:
LNQECAAYTNRALCYLTLKQ
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
60.1
44.8
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
67
0.38
1.1
63.5
42.2
Minor 5ss
41.4
-1
3.3
59.8
44.8
Minor BPS
58.7
0.25
1.7
66.19
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008374
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008706
2062562 - 2066312
3751