About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_2073906_2074345_F


Intron Information:

Intron Rank:
8

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
2073906 - 2074345

Intron Length:
440

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TCA|GTGAGTATT

5'SS Class:
major

3'SS Sequence:
TGTTGTGCTTTAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
GTTTGAC

U12 Branch Point Sequence:
TGTTGTTTGACT

Flanking Amino Acid:
ELDQEDEENSNPPYRNFLLH

Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
76.2
0.62
1
81
32.8

Major BPS
68.7
0.47
1.2
63.1
44.5

Major PPT
73
0.52
0.9
70.2
41.3

Minor 5ss
38.4
-1.3
3
57
41.2

Minor BPS
66.1
0.59
1.8
83.64
37.6

Associated Gene:

Gene:
STK4

Ensembl Gene ID:

Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

2066333 - 2108713
42381